Variant report

Variant	rs13208660
Chromosome Location	chr6:132475536-132475537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11967955	0.94[AFR][1000 genomes]
rs13192137	0.88[AFR][1000 genomes]
rs13202440	0.94[AFR][1000 genomes]
rs1950685	0.94[AFR][1000 genomes]
rs36041817	0.89[AFR][1000 genomes]
rs71574612	0.83[AFR][1000 genomes]
rs9483401	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132471800-132477200	Weak transcription	HUVEC	blood vessel
3	chr6:132475000-132476000	Enhancers	Osteobl	bone
4	chr6:132475000-132476400	Weak transcription	NHLF	lung
5	chr6:132475200-132476200	Enhancers	NHDF-Ad	bronchial
6	chr6:132475200-132476600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132475200-132485800	Weak transcription	HSMMtube	muscle
8	chr6:132475400-132476800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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