Variant report

Variant	rs71574612
Chromosome Location	chr6:132509008-132509009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11963014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11967955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13192137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13202440	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13208660	0.83[AFR][1000 genomes]
rs13211182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36041817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:132508400-132510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132508400-132513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132508600-132511800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:132509000-132509800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:132509000-132512400	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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