Variant report

Variant	rs36041817
Chromosome Location	chr6:132476996-132476997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11963014	1.00[AMR][1000 genomes]
rs11967955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13192137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13202440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13208660	0.89[AFR][1000 genomes]
rs13211182	1.00[AMR][1000 genomes]
rs1950685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71574612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483401	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132471800-132477200	Weak transcription	HUVEC	blood vessel
3	chr6:132475200-132485800	Weak transcription	HSMMtube	muscle
4	chr6:132476600-132478400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132476800-132478400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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