Variant report

Variant	rs1320936
Chromosome Location	chr12:62552757-62552758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62551164..62553377-chr12:62561402..62563915,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10506435	1.00[CHB][hapmap]
rs11174439	1.00[ASW][hapmap]
rs17125724	1.00[CHB][hapmap]
rs17125738	1.00[CHB][hapmap]
rs17656558	0.80[CEU][hapmap]
rs56014209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963802	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62551000-62554600	Enhancers	Primary T cells from cord blood	blood
2	chr12:62551200-62553600	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:62551400-62553200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:62551600-62554600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:62551800-62553000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:62552000-62553200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:62552000-62553200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr12:62552000-62553400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr12:62552000-62553600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:62552200-62553000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:62552200-62553000	Enhancers	Adipose Nuclei	Adipose
12	chr12:62552200-62553200	Enhancers	Dnd41	blood
13	chr12:62552200-62554000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:62552200-62554200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr12:62552200-62554200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr12:62552200-62554200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr12:62552400-62553200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:62552400-62553200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr12:62552600-62554600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr12:62552600-62557600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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