Variant report

Variant	rs7963802
Chromosome Location	chr12:62395774-62395775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10506435	1.00[CHB][hapmap]
rs1320936	1.00[CHB][hapmap]
rs17125724	1.00[CHB][hapmap]
rs17125738	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3323443	chr12:62392085-62396383	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv559152	chr12:62392548-62395774	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1849219	chr12:62394002-62395774	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7963802	IL1R2	trans	lymphoblastoid	seeQTL
rs7963802	DOCK9	trans	lymphoblastoid	seeQTL
rs7963802	MAL	trans	lymphoblastoid	seeQTL
rs7963802	CLDN16	trans	lymphoblastoid	seeQTL
rs7963802	DSC3	trans	lymphoblastoid	seeQTL
rs7963802	NRCAM	trans	lymphoblastoid	seeQTL
rs7963802	KHDRBS3	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62393400-62396600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr12:62393600-62396600	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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