Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506433	1.00[CEU][hapmap]
rs11836835	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11837618	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12313846	0.85[CEU][hapmap]
rs1320936	1.00[CHB][hapmap]
rs17125704	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17125724	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17125738	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17654475	0.92[CEU][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs17654643	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17654661	1.00[CEU][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs17654807	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17654962	1.00[CEU][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs17656359	0.85[CEU][hapmap]
rs17656662	0.85[CEU][hapmap]
rs17706308	1.00[CEU][hapmap]
rs17713184	0.85[CEU][hapmap]
rs3892748	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs56111414	0.94[EUR][1000 genomes]
rs73122033	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73122055	0.92[EUR][1000 genomes]
rs7963802	1.00[CHB][hapmap]
rs9669548	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10506435	TSPAN31	cis	parietal	SCAN
rs10506435	KIF5A	cis	parietal	SCAN
rs10506435	MIP	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62438200-62439000	Enhancers	Ovary	ovary
2	chr12:62438600-62439600	Enhancers	Fetal Brain Female	brain
3	chr12:62438600-62440000	Enhancers	Fetal Stomach	stomach

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