Variant report

Variant	rs17713184
Chromosome Location	chr12:62469813-62469814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10506433	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs10506435	0.85[CEU][hapmap]
rs11609226	1.00[ASN][1000 genomes]
rs11612077	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs11612171	1.00[ASN][1000 genomes]
rs11615656	1.00[ASN][1000 genomes]
rs11832185	1.00[YRI][hapmap]
rs11832462	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs11834730	1.00[YRI][hapmap]
rs11836702	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11836749	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836835	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11837325	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs11837421	1.00[YRI][hapmap]
rs11837618	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs12313846	0.86[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17125704	0.86[CEU][hapmap]
rs17125724	0.86[CEU][hapmap]
rs17654643	0.86[CEU][hapmap]
rs17654661	0.86[CEU][hapmap]
rs17654807	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs17654962	0.86[CEU][hapmap]
rs17656359	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17656662	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17657275	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17659212	1.00[ASN][1000 genomes]
rs17705009	1.00[YRI][hapmap]
rs17706308	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs17713527	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713954	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028727	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3892748	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs55760731	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68065049	1.00[ASN][1000 genomes]
rs7139338	1.00[ASN][1000 genomes]
rs7296903	1.00[ASN][1000 genomes]
rs7308137	1.00[ASN][1000 genomes]
rs73123946	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123987	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73129936	1.00[ASN][1000 genomes]
rs73131820	1.00[ASN][1000 genomes]
rs73131826	1.00[ASN][1000 genomes]
rs73131829	1.00[ASN][1000 genomes]
rs73131836	1.00[ASN][1000 genomes]
rs73133481	1.00[ASN][1000 genomes]
rs73133484	1.00[ASN][1000 genomes]
rs7979000	1.00[ASN][1000 genomes]
rs9669548	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9737799	1.00[YRI][hapmap]
rs9738227	0.93[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs9738424	1.00[ASN][1000 genomes]
rs9738426	1.00[ASN][1000 genomes]
rs9738798	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs9739100	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17713184	BAZ2A	cis	parietal	SCAN
rs17713184	MON2	cis	cerebellum	SCAN
rs17713184	MIP	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62467800-62471400	Weak transcription	Aorta	Aorta
2	chr12:62469200-62470600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links