Variant report

Variant	rs9739100
Chromosome Location	chr12:62538784-62538785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10506433	1.00[YRI][hapmap]
rs11609226	1.00[ASN][1000 genomes]
rs11612077	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612171	1.00[ASN][1000 genomes]
rs11615656	1.00[ASN][1000 genomes]
rs11832185	1.00[YRI][hapmap]
rs11832462	0.93[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834730	1.00[YRI][hapmap]
rs11836702	0.93[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836749	1.00[ASN][1000 genomes]
rs11836835	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11837325	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837421	1.00[YRI][hapmap]
rs11837618	1.00[YRI][hapmap]
rs12313846	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654807	1.00[YRI][hapmap]
rs17656359	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs17656662	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17657275	0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs17659212	1.00[ASN][1000 genomes]
rs17705009	1.00[YRI][hapmap]
rs17706308	1.00[YRI][hapmap]
rs17713184	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17713527	0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs17713954	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs2028727	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs3892748	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs55760731	1.00[ASN][1000 genomes]
rs68065049	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139338	1.00[ASN][1000 genomes]
rs7296903	1.00[ASN][1000 genomes]
rs7305206	1.00[YRI][hapmap]
rs7308137	1.00[ASN][1000 genomes]
rs73123946	1.00[ASN][1000 genomes]
rs73123987	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73129936	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131820	1.00[ASN][1000 genomes]
rs73131826	1.00[ASN][1000 genomes]
rs73131829	1.00[ASN][1000 genomes]
rs73131836	1.00[ASN][1000 genomes]
rs73133481	1.00[ASN][1000 genomes]
rs73133484	1.00[ASN][1000 genomes]
rs7979000	1.00[ASN][1000 genomes]
rs9669548	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9737799	1.00[YRI][hapmap]
rs9738227	0.93[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738424	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738426	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738798	0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9739100	MIP	cis	parietal	SCAN
rs9739100	MON2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62535800-62542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62535800-62545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62538000-62545000	Weak transcription	Pancreas	Pancrea

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