Variant report

Variant	rs7139338
Chromosome Location	chr12:62630696-62630697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr12:62630644-62631338	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62630115..62633060-chr12:62634433..62636233,3	K562	blood:
2	chr12:62629680..62631494-chr12:62645421..62647480,2	MCF-7	breast:

Variant related genes	Relation type
KLF17P1	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11609226	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609261	0.85[EUR][1000 genomes]
rs11612077	1.00[ASN][1000 genomes]
rs11612171	1.00[ASN][1000 genomes]
rs11614866	0.83[AFR][1000 genomes]
rs11615656	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615693	0.83[AFR][1000 genomes]
rs11832462	1.00[ASN][1000 genomes]
rs11836702	1.00[ASN][1000 genomes]
rs11836749	1.00[ASN][1000 genomes]
rs11836835	1.00[ASN][1000 genomes]
rs11837325	1.00[ASN][1000 genomes]
rs12313846	1.00[ASN][1000 genomes]
rs17656662	1.00[ASN][1000 genomes]
rs17657275	1.00[ASN][1000 genomes]
rs17659212	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713184	1.00[ASN][1000 genomes]
rs17713527	1.00[ASN][1000 genomes]
rs17713954	1.00[ASN][1000 genomes]
rs2028727	1.00[ASN][1000 genomes]
rs3892748	1.00[ASN][1000 genomes]
rs55760731	1.00[ASN][1000 genomes]
rs55931991	0.95[EUR][1000 genomes]
rs56131858	0.91[EUR][1000 genomes]
rs60968357	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68065049	1.00[ASN][1000 genomes]
rs7296326	0.83[AFR][1000 genomes]
rs7296903	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308137	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123946	1.00[ASN][1000 genomes]
rs73123987	1.00[ASN][1000 genomes]
rs73129936	1.00[ASN][1000 genomes]
rs73131820	1.00[ASN][1000 genomes]
rs73131826	1.00[ASN][1000 genomes]
rs73131829	1.00[ASN][1000 genomes]
rs73131836	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133475	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73133481	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133484	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135204	0.98[EUR][1000 genomes]
rs73135207	0.98[EUR][1000 genomes]
rs73135222	1.00[EUR][1000 genomes]
rs73135269	0.83[AFR][1000 genomes]
rs73135271	0.83[AFR][1000 genomes]
rs73135280	0.83[AFR][1000 genomes]
rs73135297	0.83[AFR][1000 genomes]
rs73135299	0.83[AFR][1000 genomes]
rs73137519	0.83[AFR][1000 genomes]
rs7979000	1.00[ASN][1000 genomes]
rs9669548	1.00[ASN][1000 genomes]
rs9738227	1.00[ASN][1000 genomes]
rs9738424	1.00[ASN][1000 genomes]
rs9738426	1.00[ASN][1000 genomes]
rs9739100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035150	chr12:62615347-62785005	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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