Variant report
| Variant | rs73135204 |
|---|---|
| Chromosome Location | chr12:62628188-62628189 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62623362..62628292-chr12:62651824..62654753,4 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C12orf61-5 | chr12:62628171-62629296 | NONHSAT029075 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198673 | Chromatin interaction |
| ENSG00000135655 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11609226 | 0.87[EUR][1000 genomes] |
| rs11609261 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11615656 | 1.00[EUR][1000 genomes] |
| rs11615916 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17659212 | 1.00[EUR][1000 genomes] |
| rs55931991 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56131858 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60968357 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7139338 | 0.98[EUR][1000 genomes] |
| rs7296903 | 1.00[EUR][1000 genomes] |
| rs7308137 | 0.98[EUR][1000 genomes] |
| rs73130001 | 0.80[AMR][1000 genomes] |
| rs73131836 | 0.87[EUR][1000 genomes] |
| rs73133475 | 0.91[EUR][1000 genomes] |
| rs73133481 | 0.91[EUR][1000 genomes] |
| rs73133484 | 1.00[EUR][1000 genomes] |
| rs73135207 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73135222 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035150 | chr12:62615347-62785005 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62627800-62628400 | Weak transcription | Gastric | stomach |
