Variant report

Variant	rs60968357
Chromosome Location	chr12:62640041-62640042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11609226	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11609261	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11615656	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11615916	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17659212	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55931991	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56131858	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7139338	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7296903	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7308137	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131836	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73133475	0.88[EUR][1000 genomes]
rs73133481	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73133484	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73135204	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73135207	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73135222	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035150	chr12:62615347-62785005	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3333147	chr12:62638510-62641108	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62636800-62642600	Weak transcription	Hela-S3	cervix
2	chr12:62637600-62641200	Weak transcription	K562	blood
3	chr12:62637800-62642000	Weak transcription	Ovary	ovary
4	chr12:62638000-62650000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links