Variant report

Variant	rs73131836
Chromosome Location	chr12:62592745-62592746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62586223..62588119-chr12:62591178..62592859,2	K562	blood:

Variant related genes	Relation type
ENSG00000198673	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11609226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609261	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11612077	1.00[ASN][1000 genomes]
rs11612171	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11615656	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832462	1.00[ASN][1000 genomes]
rs11836702	1.00[ASN][1000 genomes]
rs11836749	1.00[ASN][1000 genomes]
rs11836835	1.00[ASN][1000 genomes]
rs11837325	1.00[ASN][1000 genomes]
rs12313846	1.00[ASN][1000 genomes]
rs17656662	1.00[ASN][1000 genomes]
rs17657275	1.00[ASN][1000 genomes]
rs17659212	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713184	1.00[ASN][1000 genomes]
rs17713527	1.00[ASN][1000 genomes]
rs17713954	1.00[ASN][1000 genomes]
rs17715440	0.81[EUR][1000 genomes]
rs2028727	1.00[ASN][1000 genomes]
rs3892748	1.00[ASN][1000 genomes]
rs55760731	1.00[ASN][1000 genomes]
rs55931991	0.85[EUR][1000 genomes]
rs56131858	0.94[EUR][1000 genomes]
rs60968357	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68065049	1.00[ASN][1000 genomes]
rs7139338	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296903	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308137	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123946	1.00[ASN][1000 genomes]
rs73123987	1.00[ASN][1000 genomes]
rs73129936	1.00[ASN][1000 genomes]
rs73131805	0.81[EUR][1000 genomes]
rs73131820	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131826	1.00[ASN][1000 genomes]
rs73131829	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131832	0.81[EUR][1000 genomes]
rs73133475	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73133481	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133484	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135204	0.87[EUR][1000 genomes]
rs73135207	0.87[EUR][1000 genomes]
rs73135222	0.85[EUR][1000 genomes]
rs7979000	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669548	1.00[ASN][1000 genomes]
rs9738227	1.00[ASN][1000 genomes]
rs9738424	1.00[ASN][1000 genomes]
rs9738426	1.00[ASN][1000 genomes]
rs9739100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62591800-62592800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:62592400-62593000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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