Variant report

Variant	rs11612171
Chromosome Location	chr12:62575791-62575792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11609226	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11612077	1.00[ASN][1000 genomes]
rs11615656	1.00[ASN][1000 genomes]
rs11832462	1.00[ASN][1000 genomes]
rs11836702	1.00[ASN][1000 genomes]
rs11836749	1.00[ASN][1000 genomes]
rs11836835	1.00[ASN][1000 genomes]
rs11837325	1.00[ASN][1000 genomes]
rs12313846	1.00[ASN][1000 genomes]
rs17656662	1.00[ASN][1000 genomes]
rs17657275	1.00[ASN][1000 genomes]
rs17659212	1.00[ASN][1000 genomes]
rs17713184	1.00[ASN][1000 genomes]
rs17713527	1.00[ASN][1000 genomes]
rs17713954	1.00[ASN][1000 genomes]
rs17715440	0.96[EUR][1000 genomes]
rs2028727	1.00[ASN][1000 genomes]
rs3892748	1.00[ASN][1000 genomes]
rs55760731	1.00[ASN][1000 genomes]
rs68065049	1.00[ASN][1000 genomes]
rs7139338	1.00[ASN][1000 genomes]
rs7296903	1.00[ASN][1000 genomes]
rs7308137	1.00[ASN][1000 genomes]
rs73123946	1.00[ASN][1000 genomes]
rs73123987	1.00[ASN][1000 genomes]
rs73129936	1.00[ASN][1000 genomes]
rs73130001	0.93[EUR][1000 genomes]
rs73131805	0.96[EUR][1000 genomes]
rs73131820	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131826	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131829	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131832	0.96[EUR][1000 genomes]
rs73131836	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73133475	0.80[AMR][1000 genomes]
rs73133481	1.00[ASN][1000 genomes]
rs73133484	1.00[ASN][1000 genomes]
rs7979000	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669548	1.00[ASN][1000 genomes]
rs9738227	1.00[ASN][1000 genomes]
rs9738424	1.00[ASN][1000 genomes]
rs9738426	1.00[ASN][1000 genomes]
rs9739100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62568800-62581800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62575000-62576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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