Variant report

Variant	rs73130001
Chromosome Location	chr12:62571546-62571547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11609261	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11612171	0.93[EUR][1000 genomes]
rs11615916	0.86[ASN][1000 genomes]
rs17715440	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55931991	0.86[ASN][1000 genomes]
rs56131858	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57961204	0.93[ASN][1000 genomes]
rs58819787	0.93[ASN][1000 genomes]
rs59390299	0.93[ASN][1000 genomes]
rs73131805	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131820	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73131826	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73131829	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73131832	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135204	0.80[AMR][1000 genomes]
rs73135207	0.80[AMR][1000 genomes]
rs73135222	0.80[AMR][1000 genomes]
rs7979000	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62567600-62572400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62568800-62581800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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