Variant report

Variant	rs73131829
Chromosome Location	chr12:62588634-62588635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:62588427-62588754	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr12:62588450-62588759	Hela-S3	cervix:	n/a	n/a
3	E2F4	chr12:62588495-62588639	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr12:62588418-62588695	MCF-7	breast:	n/a	n/a
5	STAT3	chr12:62588441-62588738	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr12:62588406-62588800	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr12:62588336-62588796	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr12:62588398-62588738	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr12:62588397-62588783	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr12:62587870-62588795	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr12:62588463-62588875	MCF10A-Er-Src	breast:	n/a	n/a
12	MYC	chr12:62588437-62588759	MCF10A-Er-Src	breast:	n/a	n/a
13	EP300	chr12:62588485-62588738	Hela-S3	cervix:	n/a	n/a
14	STAT3	chr12:62588506-62588738	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
FAM19A2	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11609226	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609261	0.81[EUR][1000 genomes]
rs11612077	1.00[ASN][1000 genomes]
rs11612171	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615656	1.00[ASN][1000 genomes]
rs11832462	1.00[ASN][1000 genomes]
rs11836702	1.00[ASN][1000 genomes]
rs11836749	1.00[ASN][1000 genomes]
rs11836835	1.00[ASN][1000 genomes]
rs11837325	1.00[ASN][1000 genomes]
rs12313846	1.00[ASN][1000 genomes]
rs17656662	1.00[ASN][1000 genomes]
rs17657275	1.00[ASN][1000 genomes]
rs17659212	1.00[ASN][1000 genomes]
rs17713184	1.00[ASN][1000 genomes]
rs17713527	1.00[ASN][1000 genomes]
rs17713954	1.00[ASN][1000 genomes]
rs17715440	1.00[EUR][1000 genomes]
rs2028727	1.00[ASN][1000 genomes]
rs3892748	1.00[ASN][1000 genomes]
rs55760731	1.00[ASN][1000 genomes]
rs68065049	1.00[ASN][1000 genomes]
rs7139338	1.00[ASN][1000 genomes]
rs7296903	1.00[ASN][1000 genomes]
rs7308137	1.00[ASN][1000 genomes]
rs73123946	1.00[ASN][1000 genomes]
rs73123987	1.00[ASN][1000 genomes]
rs73129936	1.00[ASN][1000 genomes]
rs73130001	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73131805	1.00[EUR][1000 genomes]
rs73131820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131826	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131832	1.00[EUR][1000 genomes]
rs73131836	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133475	0.83[AMR][1000 genomes]
rs73133481	1.00[ASN][1000 genomes]
rs73133484	1.00[ASN][1000 genomes]
rs7979000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669548	1.00[ASN][1000 genomes]
rs9738227	1.00[ASN][1000 genomes]
rs9738424	1.00[ASN][1000 genomes]
rs9738426	1.00[ASN][1000 genomes]
rs9739100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62586600-62589200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:62586800-62588800	Enhancers	HepG2	liver
3	chr12:62587000-62589000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:62587000-62589200	Enhancers	NHEK	skin
5	chr12:62587000-62589400	Enhancers	HMEC	breast
6	chr12:62587600-62589200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr12:62588200-62588800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:62588400-62588800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr12:62588600-62588800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr12:62588600-62589000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:62588600-62589000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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