Variant report
| Variant | rs11609261 |
|---|---|
| Chromosome Location | chr12:62597529-62597530 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11609226 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11615656 | 0.87[EUR][1000 genomes] |
| rs11615916 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17659212 | 0.87[EUR][1000 genomes] |
| rs17715440 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55931991 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56131858 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs57961204 | 0.85[ASN][1000 genomes] |
| rs58819787 | 0.85[ASN][1000 genomes] |
| rs59390299 | 0.85[ASN][1000 genomes] |
| rs60968357 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7139338 | 0.85[EUR][1000 genomes] |
| rs7296903 | 0.87[EUR][1000 genomes] |
| rs7308137 | 0.85[EUR][1000 genomes] |
| rs73130001 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73131805 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73131820 | 0.81[EUR][1000 genomes] |
| rs73131829 | 0.81[EUR][1000 genomes] |
| rs73131832 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73131836 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73133475 | 0.96[EUR][1000 genomes] |
| rs73133481 | 0.88[EUR][1000 genomes] |
| rs73133484 | 0.87[EUR][1000 genomes] |
| rs73135204 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73135207 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73135222 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7979000 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62593200-62609000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
