Variant report

Variant	rs17654807
Chromosome Location	chr12:62426229-62426230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10506433	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10506435	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11832185	1.00[YRI][hapmap]
rs11834730	1.00[YRI][hapmap]
rs11836702	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs11836835	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11837325	0.81[CEU][hapmap]
rs11837421	1.00[YRI][hapmap]
rs11837618	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313846	0.86[CEU][hapmap]
rs17125704	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17125724	1.00[CEU][hapmap]
rs17654475	0.93[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654643	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654661	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654962	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17656359	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs17656662	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs17705009	1.00[YRI][hapmap]
rs17706308	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17713184	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs3892748	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56111414	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73122033	0.88[EUR][1000 genomes]
rs73122055	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669548	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9737799	1.00[YRI][hapmap]
rs9739100	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62422600-62429000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62426000-62427400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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