Variant report

Variant	rs1321272
Chromosome Location	chr6:132471613-132471614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13328255	1.00[EUR][1000 genomes]
rs768560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483396	1.00[EUR][1000 genomes]
rs9483403	1.00[EUR][1000 genomes]
rs9493206	1.00[AMR][1000 genomes]
rs9493211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132469600-132474000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:132469600-132474200	Weak transcription	HSMM	muscle
4	chr6:132469800-132474000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:132469800-132474000	Weak transcription	NH-A	brain
6	chr6:132469800-132474400	Weak transcription	HSMMtube	muscle
7	chr6:132470000-132473800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:132470000-132474000	Weak transcription	NHDF-Ad	bronchial
9	chr6:132470000-132474000	Weak transcription	Osteobl	bone
10	chr6:132470200-132473800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132470800-132471800	Strong transcription	HUVEC	blood vessel
12	chr6:132471000-132473800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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