Variant report

Variant	rs9493211
Chromosome Location	chr6:132488071-132488072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1321272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13328255	1.00[EUR][1000 genomes]
rs768560	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483396	1.00[EUR][1000 genomes]
rs9483403	1.00[EUR][1000 genomes]
rs9493206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132482600-132488800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:132482600-132489400	Weak transcription	Aorta	Aorta
4	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:132487000-132489000	Weak transcription	HUVEC	blood vessel
6	chr6:132487600-132489000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132487800-132491200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:132488000-132489000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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