Variant report

Variant	rs9483390
Chromosome Location	chr6:132469810-132469811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1321272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13328255	1.00[EUR][1000 genomes]
rs768560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483396	1.00[EUR][1000 genomes]
rs9483403	1.00[EUR][1000 genomes]
rs9493202	1.00[MEX][hapmap]
rs9493206	1.00[AMR][1000 genomes]
rs9493211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493230	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132467200-132470000	Strong transcription	HUVEC	blood vessel
3	chr6:132467400-132470000	Enhancers	NHDF-Ad	bronchial
4	chr6:132467600-132471000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132467800-132470000	Enhancers	Osteobl	bone
6	chr6:132467800-132470200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132468000-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132468400-132470000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:132468600-132470000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132469600-132474000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:132469600-132474200	Weak transcription	HSMM	muscle
12	chr6:132469800-132470200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:132469800-132474000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:132469800-132474000	Weak transcription	NH-A	brain
15	chr6:132469800-132474400	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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