Variant report

Variant	rs13217145
Chromosome Location	chr6:128190848-128190849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10484716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12525945	0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs17054989	0.86[CHB][hapmap]
rs17055050	0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs6901443	0.90[CHB][hapmap]
rs6918558	0.91[CHB][hapmap]
rs7743701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7760902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773220	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372882	0.93[CEU][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375534	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs9385439	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs9385440	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9401999	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128186400-128191000	Enhancers	Primary T cells from cord blood	blood
2	chr6:128187400-128193400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128188200-128192200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:128188200-128193200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128188200-128193200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:128188400-128192600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:128188400-128192800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128188400-128193000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128188400-128193400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:128189200-128191600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:128189600-128191200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:128189600-128191600	Enhancers	Brain Anterior Caudate	brain
13	chr6:128189600-128192200	Enhancers	Brain Substantia Nigra	brain
14	chr6:128190400-128191400	Active TSS	Brain Cingulate Gyrus	brain
15	chr6:128190400-128191600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:128190400-128191600	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr6:128190600-128191600	Genic enhancers	Fetal Thymus	thymus
18	chr6:128190600-128192200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:128190800-128191200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:128190800-128191600	Enhancers	Thymus	Thymus

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