Variant report

Variant	rs7743701
Chromosome Location	chr6:128170937-128170938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484716	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12525945	0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.93[MKK][hapmap];0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs13217145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17054989	0.85[CHB][hapmap]
rs17055050	0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap];0.87[ASN][1000 genomes]
rs57507694	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6901443	0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs6918558	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs7760902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773220	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372882	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375534	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs9385439	0.90[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs9385440	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401999	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128160600-128176400	Strong transcription	Fetal Thymus	thymus
4	chr6:128162800-128174200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128165200-128177000	Weak transcription	Thymus	Thymus
6	chr6:128165800-128173400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128168200-128174200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128168600-128171200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:128168800-128171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:128169000-128171400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:128169000-128172600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:128170400-128171600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:128170600-128171800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:128170600-128171800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:128170800-128171200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:128170800-128171400	Strong transcription	Primary T cells from cord blood	blood
17	chr6:128170800-128172000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links