Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10484716	0.90[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs12525945	0.95[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs13217145	0.90[CHB][hapmap]
rs17054989	0.86[CHB][hapmap]
rs17055050	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs17055058	0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs4142030	0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs4897232	0.85[ASN][1000 genomes]
rs4897234	0.86[ASN][1000 genomes]
rs57507694	0.89[ASN][1000 genomes]
rs62425526	0.86[ASN][1000 genomes]
rs6918558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7743701	0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs7749181	0.85[ASN][1000 genomes]
rs7760902	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7767438	0.91[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs7773220	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs9375534	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs9385439	0.91[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap]
rs9385440	0.82[ASN][1000 genomes]
rs9398854	0.84[ASN][1000 genomes]
rs9401999	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
4	chr6:128143000-128149800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:128143800-128151400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:128146600-128149800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:128147200-128151800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:128147200-128156000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128147600-128149200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128148200-128151000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128148200-128151200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:128148400-128149400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:128148800-128149000	Genic enhancers	Primary T cells from cord blood	blood
14	chr6:128148800-128151200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:128148800-128151200	Strong transcription	Thymus	Thymus
16	chr6:128148800-128158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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