Variant report

Variant	rs4897234
Chromosome Location	chr6:128156890-128156891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17055050	0.80[ASN][1000 genomes]
rs17055058	0.99[ASN][1000 genomes]
rs4142030	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897232	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62425526	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6901443	0.86[ASN][1000 genomes]
rs6918558	0.84[ASN][1000 genomes]
rs7749181	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767438	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398854	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401999	0.80[ASN][1000 genomes]
rs9482842	0.81[EUR][1000 genomes]
rs9491876	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
4	chr6:128148800-128158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:128151000-128157200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:128151200-128160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:128153200-128160600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:128154600-128158000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:128154600-128158400	Strong transcription	Primary T cells from cord blood	blood
10	chr6:128154800-128157800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:128155200-128157400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:128155800-128160600	Weak transcription	Thymus	Thymus
13	chr6:128156000-128157200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:128156400-128157200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:128156400-128157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:128156400-128157800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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