Variant report

Variant	rs4142030
Chromosome Location	chr6:128154686-128154687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12525945	0.82[CHD][hapmap]
rs17055050	0.86[CHD][hapmap]
rs17055058	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs270024	0.84[MKK][hapmap];0.92[YRI][hapmap]
rs270027	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs4897232	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897233	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4897234	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425526	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6901443	0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs6918558	0.84[ASN][1000 genomes]
rs6934865	0.82[CEU][hapmap]
rs7738306	0.82[EUR][1000 genomes]
rs7749181	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385439	0.80[CHD][hapmap]
rs9398854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9482835	0.82[CEU][hapmap];0.80[TSI][hapmap]
rs9482842	0.85[GIH][hapmap];0.82[TSI][hapmap]
rs9491876	0.83[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128140400-128158400	Strong transcription	Fetal Thymus	thymus
4	chr6:128147200-128156000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:128148800-128158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:128151000-128157200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128151200-128160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:128151800-128156000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:128153200-128160600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128153600-128154800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:128153800-128156000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128154600-128154800	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr6:128154600-128154800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:128154600-128155800	Strong transcription	Thymus	Thymus
15	chr6:128154600-128156400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:128154600-128158000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:128154600-128158400	Strong transcription	Primary T cells from cord blood	blood

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