Variant report

Variant	rs270024
Chromosome Location	chr6:128200322-128200323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs270004	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs270006	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs270025	0.88[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs270027	0.87[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs270028	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs270029	0.88[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs270030	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs270031	0.90[EUR][1000 genomes]
rs270032	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs270033	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs270035	0.88[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs270036	0.87[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs270038	0.80[EUR][1000 genomes]
rs270042	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs270043	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs270046	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs270047	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4142030	0.84[MKK][hapmap];0.92[YRI][hapmap]
rs7738306	0.83[CEU][hapmap]
rs875336	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9482842	0.83[CEU][hapmap]
rs9491876	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128196800-128200800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:128196800-128204000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:128197200-128208200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:128198200-128200600	Enhancers	Fetal Thymus	thymus
6	chr6:128198200-128204600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:128198600-128200400	Enhancers	Thymus	Thymus
8	chr6:128198600-128200800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128198600-128201000	Enhancers	Dnd41	blood
10	chr6:128199200-128201400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:128199400-128202400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:128199600-128200400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:128199600-128200800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:128199600-128200800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:128199600-128203000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:128199800-128200800	Enhancers	Primary T cells from cord blood	blood
17	chr6:128199800-128200800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:128200000-128200600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:128200200-128200800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:128200200-128201000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:128200200-128201600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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