Variant report

Variant	rs875336
Chromosome Location	chr6:128196309-128196310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs187938	0.82[EUR][1000 genomes]
rs270004	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs270006	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs270024	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs270025	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270027	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270028	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270029	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270030	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270031	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270032	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270035	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270036	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270038	0.81[EUR][1000 genomes]
rs270042	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270046	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7738306	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9482842	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9491876	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128191400-128198800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128191600-128198600	Weak transcription	Thymus	Thymus
3	chr6:128192800-128197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:128193400-128198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:128193800-128197800	Strong transcription	Fetal Thymus	thymus
6	chr6:128194000-128197000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:128195200-128196800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:128195200-128197200	Strong transcription	Primary T cells from cord blood	blood
9	chr6:128195400-128196400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:128195400-128196800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128195400-128198200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:128196000-128197000	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:128196200-128196600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:128196200-128196800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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