Variant report

Variant	rs270042
Chromosome Location	chr6:128185084-128185085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128183469..128185798-chr6:128259779..128262240,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs187938	0.85[EUR][1000 genomes]
rs270004	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270006	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270024	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs270025	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270027	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270028	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270029	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270030	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270031	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270032	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270033	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270035	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs270036	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270038	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270043	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270047	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738306	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs875336	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9482842	0.94[ASN][1000 genomes]
rs9491876	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:128181600-128185400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128181600-128185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:128181800-128185400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:128183200-128185600	Strong transcription	Fetal Thymus	thymus
10	chr6:128183400-128185200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:128183800-128187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128184200-128186000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:128184200-128186200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:128184400-128186400	Genic enhancers	Primary T cells from cord blood	blood
15	chr6:128184600-128186200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:128184600-128186800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:128185000-128185600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:128185000-128185600	Weak transcription	Thymus	Thymus

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