Variant report

Variant	rs270038
Chromosome Location	chr6:128182695-128182696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs187938	0.82[EUR][1000 genomes]
rs270004	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270006	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270024	0.80[EUR][1000 genomes]
rs270025	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270027	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270028	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs270029	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270030	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270031	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs270032	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270033	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270035	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs270036	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270042	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270043	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270046	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs270047	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs875336	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128176600-128183600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:128180400-128184600	Weak transcription	Thymus	Thymus
5	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:128180600-128184600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:128180800-128183400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:128181200-128184200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:128181600-128183200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:128181600-128183800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:128181600-128184200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:128181600-128184600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:128181600-128185400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:128181600-128185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:128181800-128183200	Weak transcription	Fetal Thymus	thymus
18	chr6:128181800-128185400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:128182200-128183200	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links