Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:54564442..54567295-chr6:54579442..54581907,3	MCF-7	breast:
2	chr6:54574954..54578587-chr6:54580352..54583856,5	MCF-7	breast:
3	chr6:54578251..54580318-chr6:54581650..54584206,2	MCF-7	breast:
4	chr6:54581649..54583716-chr6:54731091..54732634,2	MCF-7	breast:
5	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
6	chr6:54579097..54581073-chr6:54581334..54583325,2	MCF-7	breast:
7	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
8	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:
9	chr6:54581587..54585941-chr6:54586924..54591451,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction
ENSG00000224984	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1039693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13193002	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs1572593	0.81[CHB][hapmap]
rs1911508	0.81[ASN][1000 genomes]
rs2174145	0.82[CEU][hapmap]
rs2297804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459021	0.85[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6899853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908136	0.81[ASN][1000 genomes]
rs6914808	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916681	0.81[CEU][hapmap]
rs6929108	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs925057	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9464124	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474965	0.80[ASN][1000 genomes]
rs9474972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9474973	0.81[ASN][1000 genomes]
rs9474974	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474991	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs981682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs995951	0.82[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54575800-54581800	Weak transcription	Fetal Lung	lung
2	chr6:54580000-54582600	Weak transcription	Stomach Mucosa	stomach
3	chr6:54580000-54583000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:54581000-54582400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:54581000-54582400	Weak transcription	HMEC	breast
6	chr6:54581200-54583000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:54581200-54583000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:54581600-54581800	Enhancers	Fetal Stomach	stomach
9	chr6:54581600-54582000	Weak transcription	Liver	Liver

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