Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54627133..54632625-chr6:54707387..54713886,8	MCF-7	breast:
2	chr6:54625827..54630691-chr6:54708545..54714193,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10223849	0.84[AFR][1000 genomes]
rs1039693	0.82[CEU][hapmap]
rs11964037	0.84[EUR][1000 genomes]
rs12199827	0.96[LWK][hapmap];0.82[MKK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs12205372	0.96[LWK][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap]
rs13193002	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs13200833	0.84[EUR][1000 genomes]
rs13217514	0.82[CEU][hapmap]
rs1911508	0.84[EUR][1000 genomes]
rs2174735	0.84[EUR][1000 genomes]
rs2297804	0.82[CEU][hapmap]
rs58988305	0.88[AFR][1000 genomes]
rs6459021	0.96[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6899853	0.82[CEU][hapmap]
rs6916681	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918290	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72967406	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464135	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9464138	0.84[AFR][1000 genomes]
rs9474972	0.82[CEU][hapmap]
rs9474973	0.84[EUR][1000 genomes]
rs9474977	0.87[EUR][1000 genomes]
rs9474987	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9474991	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9474997	0.83[AFR][1000 genomes]
rs9475005	0.80[CEU][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs981682	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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