Variant report
| Variant | rs72967406 |
|---|---|
| Chromosome Location | chr6:54630384-54630385 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11964037 | 0.84[EUR][1000 genomes] |
| rs13193002 | 0.84[EUR][1000 genomes] |
| rs13200833 | 0.84[EUR][1000 genomes] |
| rs1911508 | 0.84[EUR][1000 genomes] |
| rs2174145 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2174735 | 0.84[EUR][1000 genomes] |
| rs6459021 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6916681 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6918290 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9464135 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9474973 | 0.84[EUR][1000 genomes] |
| rs9474977 | 0.87[EUR][1000 genomes] |
| rs9474987 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9474991 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv885901 | chr6:54588069-54635417 | Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv885902 | chr6:54588069-54656673 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
