Variant report

Variant	rs6908136
Chromosome Location	chr6:54580576-54580577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54564442..54567295-chr6:54579442..54581907,3	MCF-7	breast:
2	chr6:54574954..54578587-chr6:54580352..54583856,5	MCF-7	breast:
3	chr6:54579097..54581073-chr6:54581334..54583325,2	MCF-7	breast:
4	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
5	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10447377	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10807475	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948830	0.80[ASN][1000 genomes]
rs10948842	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757171	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11964037	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11967781	0.82[EUR][1000 genomes]
rs12211545	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12215844	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13193002	0.98[ASN][1000 genomes]
rs13200833	0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13217514	0.81[ASN][1000 genomes]
rs1359009	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1911508	1.00[ASN][1000 genomes]
rs2089411	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174735	0.98[ASN][1000 genomes]
rs2297804	0.81[ASN][1000 genomes]
rs6459021	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6899853	0.81[ASN][1000 genomes]
rs6918290	0.96[ASN][1000 genomes]
rs7746312	0.84[EUR][1000 genomes]
rs925057	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296764	0.84[EUR][1000 genomes]
rs9464114	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9464116	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9474940	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9474943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9474944	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9474965	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9474972	0.83[ASN][1000 genomes]
rs9474973	1.00[ASN][1000 genomes]
rs9474974	0.81[ASN][1000 genomes]
rs9474977	0.98[ASN][1000 genomes]
rs9474987	0.98[ASN][1000 genomes]
rs9474991	0.96[ASN][1000 genomes]
rs981682	0.81[ASN][1000 genomes]
rs9885668	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995951	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54575800-54581800	Weak transcription	Fetal Lung	lung
2	chr6:54579800-54581000	Enhancers	Fetal Intestine Small	intestine
3	chr6:54579800-54581400	Enhancers	Liver	Liver
4	chr6:54580000-54582600	Weak transcription	Stomach Mucosa	stomach
5	chr6:54580000-54583000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:54580400-54581200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:54580400-54581200	Enhancers	Fetal Intestine Large	intestine

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