Variant report

Variant	rs10948842
Chromosome Location	chr6:54568286-54568287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54564726..54568882-chr6:54587061..54590275,4	MCF-7	breast:
2	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10447377	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs11757171	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs11964037	0.95[ASN][1000 genomes]
rs11967833	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12198936	0.89[EUR][1000 genomes]
rs12208090	0.87[EUR][1000 genomes]
rs12211545	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215844	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12527497	0.88[EUR][1000 genomes]
rs12529276	0.88[EUR][1000 genomes]
rs13193002	0.84[CHB][hapmap];0.95[ASN][1000 genomes]
rs13200833	0.88[ASN][1000 genomes]
rs1359009	0.81[ASN][1000 genomes]
rs1395632	0.88[EUR][1000 genomes]
rs1395635	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1911508	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2089411	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2174735	0.95[ASN][1000 genomes]
rs34970714	0.88[EUR][1000 genomes]
rs4715469	0.88[EUR][1000 genomes]
rs6459021	0.84[CHB][hapmap];0.97[ASN][1000 genomes]
rs6903280	0.87[EUR][1000 genomes]
rs6906715	0.88[EUR][1000 genomes]
rs6908136	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6918290	0.93[ASN][1000 genomes]
rs925057	0.84[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9464114	0.81[ASN][1000 genomes]
rs9464116	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474940	0.81[ASN][1000 genomes]
rs9474943	0.81[ASN][1000 genomes]
rs9474944	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9474965	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9474972	0.80[ASN][1000 genomes]
rs9474973	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9474977	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9474987	0.95[ASN][1000 genomes]
rs9474991	0.84[CHB][hapmap];0.93[ASN][1000 genomes]
rs9885668	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs995951	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564200-54571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54564400-54570800	Weak transcription	Stomach Mucosa	stomach
3	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
4	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:54568000-54570000	Weak transcription	Fetal Intestine Small	intestine

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