Variant report

Variant	rs1395632
Chromosome Location	chr6:54557514-54557515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54556132..54558033-chr6:54708676..54711461,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1018141	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948842	0.88[EUR][1000 genomes]
rs11967781	0.91[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11967833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12208090	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12211545	0.83[EUR][1000 genomes]
rs12527497	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12529276	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1395635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089411	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34970714	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4715469	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs540890	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6903280	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906715	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7740110	0.91[CHB][hapmap]
rs7746312	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7753256	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296764	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3414743	chr6:54555743-54557741	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54557200-54557600	Enhancers	Stomach Mucosa	stomach

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