Variant report
Variant | rs4715469 |
---|---|
Chromosome Location | chr6:54561417-54561418 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:7 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:54558970..54566519-chr6:54708534..54713743,16 | MCF-7 | breast: | |
2 | chr6:54560120..54562700-chr6:54564068..54565878,2 | MCF-7 | breast: | |
3 | chr6:54559522..54567174-chr6:54707552..54714330,37 | MCF-7 | breast: | |
4 | chr6:54560857..54562671-chr6:54739251..54742148,2 | MCF-7 | breast: | |
5 | chr6:54560989..54563870-chr6:54779771..54781666,2 | MCF-7 | breast: | |
6 | chr6:54561293..54570100-chr6:54582505..54590247,14 | MCF-7 | breast: | |
7 | chr6:54559803..54567776-chr6:54579525..54585377,11 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000168143 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1018141 | 0.88[EUR][1000 genomes] |
rs10948842 | 0.88[EUR][1000 genomes] |
rs11967781 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11967833 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12198936 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12208090 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12211545 | 0.83[EUR][1000 genomes] |
rs12527497 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12529276 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1395632 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1395635 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1948954 | 0.91[CHB][hapmap];0.82[JPT][hapmap] |
rs1983140 | 0.91[CHB][hapmap] |
rs2089411 | 0.89[EUR][1000 genomes] |
rs34970714 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4712070 | 0.87[JPT][hapmap] |
rs540890 | 0.86[EUR][1000 genomes] |
rs6903280 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6906715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7746312 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7753256 | 0.88[EUR][1000 genomes] |
rs9296764 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
No data |