Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54615642..54618179-chr6:54622767..54625294,2	MCF-7	breast:
2	chr6:54621367..54623899-chr6:54711418..54713643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10948840	0.81[ASN][1000 genomes]
rs10948846	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11967781	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12208090	0.86[JPT][hapmap]
rs12525001	0.86[CHB][hapmap]
rs12527077	0.80[CHB][hapmap]
rs12527080	0.87[CHB][hapmap]
rs12527124	0.87[CHB][hapmap]
rs12661998	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12662465	0.87[CHB][hapmap]
rs16869519	0.86[CHB][hapmap]
rs16885866	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs16885911	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs16885948	0.83[ASN][1000 genomes]
rs35953958	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4712068	0.91[CHB][hapmap]
rs4715469	0.87[JPT][hapmap]
rs4715478	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4994100	0.83[ASN][1000 genomes]
rs58302712	0.83[ASN][1000 genomes]
rs60501416	0.81[ASN][1000 genomes]
rs6906715	0.87[JPT][hapmap]
rs6915244	0.83[ASN][1000 genomes]
rs73446026	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73446030	0.83[ASN][1000 genomes]
rs73446036	0.83[ASN][1000 genomes]
rs73446043	0.83[ASN][1000 genomes]
rs7746312	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7751908	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54622200-54623400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:54622800-54623600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:54622800-54623600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:54622800-54623800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:54623000-54623600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:54623000-54623800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:54623000-54624000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:54623200-54623600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:54623200-54623600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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