Variant report

Variant	rs73446026
Chromosome Location	chr6:54608239-54608240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1039496	0.89[ASN][1000 genomes]
rs10948840	0.92[ASN][1000 genomes]
rs10948844	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10948846	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527042	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527080	0.94[ASN][1000 genomes]
rs12527124	0.96[ASN][1000 genomes]
rs12528270	0.94[ASN][1000 genomes]
rs12528881	0.96[ASN][1000 genomes]
rs12661998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662465	0.96[ASN][1000 genomes]
rs1648201	0.81[ASN][1000 genomes]
rs16869519	0.94[ASN][1000 genomes]
rs16885735	0.85[ASN][1000 genomes]
rs16885866	0.92[ASN][1000 genomes]
rs16885911	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885948	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1976539	0.86[ASN][1000 genomes]
rs1983140	0.81[ASN][1000 genomes]
rs2048112	0.96[ASN][1000 genomes]
rs2048113	0.82[ASN][1000 genomes]
rs2894821	0.81[ASN][1000 genomes]
rs34752465	0.92[ASN][1000 genomes]
rs35953958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712068	0.96[ASN][1000 genomes]
rs4712070	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4715470	0.94[ASN][1000 genomes]
rs4715478	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4994100	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58302712	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60501416	0.92[ASN][1000 genomes]
rs67799698	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67875074	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6915244	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73442093	0.82[ASN][1000 genomes]
rs73444113	0.96[ASN][1000 genomes]
rs73444116	0.94[ASN][1000 genomes]
rs73444125	0.96[ASN][1000 genomes]
rs73446030	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446036	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73446043	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54600200-54612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54601400-54613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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