Variant report

Variant	rs2894821
Chromosome Location	chr6:54555116-54555117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1039495	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1039496	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10948840	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10948844	0.82[ASN][1000 genomes]
rs10948846	0.81[ASN][1000 genomes]
rs12525539	0.83[EUR][1000 genomes]
rs12527077	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12527080	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12527124	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12528270	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12528881	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12529275	0.81[EUR][1000 genomes]
rs12661998	0.81[ASN][1000 genomes]
rs12662465	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395624	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1648201	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16869519	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16885649	0.82[EUR][1000 genomes]
rs16885656	0.82[EUR][1000 genomes]
rs16885668	0.82[EUR][1000 genomes]
rs16885735	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16885866	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16885911	0.81[ASN][1000 genomes]
rs16885948	0.81[ASN][1000 genomes]
rs1976539	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2048112	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34752465	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4712068	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4715468	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4715470	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715478	0.80[ASN][1000 genomes]
rs4994100	0.81[ASN][1000 genomes]
rs58302712	0.81[ASN][1000 genomes]
rs60501416	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs608873	0.81[EUR][1000 genomes]
rs67799698	0.83[ASN][1000 genomes]
rs67875074	0.83[ASN][1000 genomes]
rs6915244	0.81[ASN][1000 genomes]
rs73444113	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73444116	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73444125	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73446026	0.81[ASN][1000 genomes]
rs73446030	0.81[ASN][1000 genomes]
rs73446036	0.81[ASN][1000 genomes]
rs73446043	0.81[ASN][1000 genomes]
rs7751908	0.82[EUR][1000 genomes]
rs7761021	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9349726	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813136	chr6:54550530-54557193	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1807602	chr6:54553140-54557193	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3473995	chr6:54553738-54557493	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3473997	chr6:54553854-54557380	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv21159	chr6:54553918-54557383	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1804920	chr6:54553922-54557399	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1811098	chr6:54553922-54557399	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1805121	chr6:54553942-54557193	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1805171	chr6:54553942-54557193	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1809635	chr6:54553942-54557193	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1812631	chr6:54553942-54557193	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1804438	chr6:54554122-54557296	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1805482	chr6:54554122-54557296	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1812353	chr6:54554502-54557193	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54554000-54555200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr6:54554600-54555400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:54554800-54555600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:54554800-54556200	Enhancers	Stomach Mucosa	stomach

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