Variant report

Variant	rs16885668
Chromosome Location	chr6:54510832-54510833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1039495	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039496	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10948839	0.87[ASN][1000 genomes]
rs10948840	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11966577	0.87[ASN][1000 genomes]
rs12525001	1.00[CEU][hapmap]
rs12525539	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12527077	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12527080	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12527124	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12527767	0.89[ASN][1000 genomes]
rs12528270	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12528881	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12529275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662465	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1395624	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1395627	0.83[ASN][1000 genomes]
rs1648200	0.86[EUR][1000 genomes]
rs1648201	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16869519	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16885649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885654	0.89[ASN][1000 genomes]
rs16885656	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885735	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16885760	0.83[ASN][1000 genomes]
rs16885866	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16885948	0.82[EUR][1000 genomes]
rs1745079	0.86[EUR][1000 genomes]
rs1951693	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1976539	0.92[EUR][1000 genomes]
rs2048112	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2894821	0.82[EUR][1000 genomes]
rs34659714	0.87[ASN][1000 genomes]
rs34752465	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4712065	0.83[ASN][1000 genomes]
rs4712066	0.83[ASN][1000 genomes]
rs4712068	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4715466	0.87[ASN][1000 genomes]
rs4715468	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4715470	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4994100	0.82[EUR][1000 genomes]
rs541689	0.89[ASN][1000 genomes]
rs58302712	0.81[EUR][1000 genomes]
rs60501416	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs608873	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61375854	0.82[ASN][1000 genomes]
rs6915244	0.82[EUR][1000 genomes]
rs73440097	0.83[ASN][1000 genomes]
rs73444113	0.90[EUR][1000 genomes]
rs73444116	0.90[EUR][1000 genomes]
rs73444125	0.90[EUR][1000 genomes]
rs73446030	0.82[EUR][1000 genomes]
rs73446036	0.82[EUR][1000 genomes]
rs73446043	0.82[EUR][1000 genomes]
rs7450207	0.86[ASN][1000 genomes]
rs7740110	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7751908	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7753964	0.90[ASN][1000 genomes]
rs7761021	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7766941	0.89[ASN][1000 genomes]
rs9349726	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9370323	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9474957	0.83[EUR][1000 genomes]
rs950077	0.87[ASN][1000 genomes]
rs953896	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54507000-54511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:54509600-54512400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:54510200-54511000	Enhancers	Osteobl	bone
4	chr6:54510400-54511400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:54510400-54511600	Weak transcription	Aorta	Aorta
6	chr6:54510400-54512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:54510800-54511400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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