Variant report

Variant	rs1951693
Chromosome Location	chr6:54484731-54484732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54483454..54486448-chr6:54709404..54710933,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1039495	0.83[EUR][1000 genomes]
rs1039496	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10948840	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948846	0.86[CHB][hapmap]
rs11967781	0.85[CHB][hapmap]
rs12525001	0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs12525539	0.86[EUR][1000 genomes]
rs12527077	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs12527080	0.89[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs12527124	0.89[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs12528270	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12528881	0.80[EUR][1000 genomes]
rs12529275	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12662465	0.89[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs1395624	0.83[EUR][1000 genomes]
rs1648200	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1648201	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16869519	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs16885649	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885656	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885668	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885735	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16885866	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16885911	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1745079	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1948954	0.81[JPT][hapmap]
rs1976539	0.82[EUR][1000 genomes]
rs2048112	0.82[EUR][1000 genomes]
rs34752465	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712068	0.89[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs4715468	0.83[EUR][1000 genomes]
rs4715470	0.80[EUR][1000 genomes]
rs60501416	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs608873	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73444116	0.80[EUR][1000 genomes]
rs7751908	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761021	0.81[EUR][1000 genomes]
rs9349726	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9370323	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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