Variant report

Variant	rs12527077
Chromosome Location	chr6:54560923-54560924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54558970..54566519-chr6:54708534..54713743,16	MCF-7	breast:
2	chr6:54560120..54562700-chr6:54564068..54565878,2	MCF-7	breast:
3	chr6:54559522..54567174-chr6:54707552..54714330,37	MCF-7	breast:
4	chr6:54560857..54562671-chr6:54739251..54742148,2	MCF-7	breast:
5	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1039495	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1039496	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10948840	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10948846	0.85[CHB][hapmap]
rs12525001	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12525539	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12527080	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12527124	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528270	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528881	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12529275	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12662465	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1395624	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1395627	0.80[ASN][1000 genomes]
rs1395635	0.80[CHB][hapmap]
rs1648200	0.81[EUR][1000 genomes]
rs1648201	0.93[EUR][1000 genomes]
rs16869519	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16885649	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16885656	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16885668	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16885735	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16885760	0.80[ASN][1000 genomes]
rs16885866	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16885911	0.85[CHB][hapmap]
rs16885948	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1745079	0.81[EUR][1000 genomes]
rs1951693	0.83[EUR][1000 genomes]
rs1976539	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2048112	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2894821	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34752465	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4712065	0.80[ASN][1000 genomes]
rs4712066	0.80[ASN][1000 genomes]
rs4712068	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4712070	0.80[CHB][hapmap]
rs4715468	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715470	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4994100	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58302712	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60501416	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs608873	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6915244	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73440097	0.80[ASN][1000 genomes]
rs73444113	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73444116	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73444125	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73446030	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73446036	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73446043	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7740110	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs7751908	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7761021	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349726	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9370323	0.83[EUR][1000 genomes]
rs9474957	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54560800-54561000	Enhancers	Monocytes-CD14+_RO01746	blood

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