Variant report

Variant	rs9474957
Chromosome Location	chr6:54549992-54549993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54547491..54552528-chr6:54710025..54715322,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1039495	0.86[EUR][1000 genomes]
rs1039496	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10948840	0.85[EUR][1000 genomes]
rs10948847	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12525539	0.84[EUR][1000 genomes]
rs12527077	0.86[EUR][1000 genomes]
rs12527080	0.83[EUR][1000 genomes]
rs12527124	0.83[EUR][1000 genomes]
rs12528270	0.84[EUR][1000 genomes]
rs12528881	0.83[EUR][1000 genomes]
rs12529275	0.83[EUR][1000 genomes]
rs12662465	0.83[EUR][1000 genomes]
rs1395624	0.86[EUR][1000 genomes]
rs1572593	0.94[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1648201	0.83[EUR][1000 genomes]
rs16869519	0.81[EUR][1000 genomes]
rs16885649	0.83[EUR][1000 genomes]
rs16885656	0.83[EUR][1000 genomes]
rs16885668	0.83[EUR][1000 genomes]
rs16885735	0.84[EUR][1000 genomes]
rs16885866	0.85[EUR][1000 genomes]
rs1976539	0.85[EUR][1000 genomes]
rs2048112	0.85[EUR][1000 genomes]
rs2397167	0.88[CEU][hapmap]
rs34752465	0.86[EUR][1000 genomes]
rs4712068	0.83[EUR][1000 genomes]
rs4715468	0.86[EUR][1000 genomes]
rs4715470	0.83[EUR][1000 genomes]
rs60501416	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs608873	0.83[EUR][1000 genomes]
rs6459019	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929307	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6939756	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73444113	0.83[EUR][1000 genomes]
rs73444116	0.83[EUR][1000 genomes]
rs73444125	0.83[EUR][1000 genomes]
rs7751908	0.83[EUR][1000 genomes]
rs7755817	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7761021	0.83[EUR][1000 genomes]
rs9296766	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9349726	0.83[EUR][1000 genomes]
rs9464126	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464129	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9474980	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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