Variant report

Variant	rs7746312
Chromosome Location	chr6:54571556-54571557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54561977..54564257-chr6:54570191..54572297,2	MCF-7	breast:
2	chr6:54570566..54573467-chr6:54582462..54585489,3	MCF-7	breast:
3	chr6:54571436..54575650-chr6:54710321..54713742,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11967781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967833	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12198936	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12208090	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527497	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529276	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395632	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1395635	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1948954	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1983140	0.91[CHB][hapmap]
rs34970714	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712070	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4715469	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903280	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6906715	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908136	0.84[EUR][1000 genomes]
rs925057	0.85[EUR][1000 genomes]
rs9296764	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9464116	0.81[EUR][1000 genomes]
rs9474965	0.85[EUR][1000 genomes]
rs9885668	0.85[EUR][1000 genomes]
rs995951	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
2	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54570800-54572400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:54570800-54572600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:54570800-54572600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:54571000-54572200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:54571000-54572400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:54571000-54572600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:54571000-54572600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:54571000-54573200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:54571000-54573400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:54571200-54572400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:54571200-54572400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:54571200-54575200	Weak transcription	Stomach Mucosa	stomach
15	chr6:54571400-54572200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:54571400-54579800	Weak transcription	Fetal Intestine Small	intestine

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