Variant report

Variant	rs9296764
Chromosome Location	chr6:54570194-54570195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54568574..54571267-chr6:54710555..54712360,2	MCF-7	breast:
2	chr6:54561977..54564257-chr6:54570191..54572297,2	MCF-7	breast:
3	chr6:54568299..54570747-chr6:54582453..54584898,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1018141	0.87[ASN][1000 genomes]
rs11967781	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11967833	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12198936	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208090	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12527497	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12529276	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1395632	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395635	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34970714	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4715469	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs540890	0.86[ASN][1000 genomes]
rs6903280	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6906715	0.92[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6908136	0.84[EUR][1000 genomes]
rs7740110	0.91[CHB][hapmap]
rs7746312	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7753256	0.82[ASN][1000 genomes]
rs925057	0.85[EUR][1000 genomes]
rs9464116	0.81[EUR][1000 genomes]
rs9474965	0.86[EUR][1000 genomes]
rs9885668	0.86[EUR][1000 genomes]
rs995951	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564200-54571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54564400-54570800	Weak transcription	Stomach Mucosa	stomach
3	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
4	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:54570000-54571400	Enhancers	Fetal Intestine Small	intestine

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