Variant report

Variant	rs540890
Chromosome Location	chr6:54506693-54506694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018141	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967781	0.90[CEU][hapmap]
rs11967833	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198936	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12208090	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12211545	0.84[EUR][1000 genomes]
rs12527497	0.86[EUR][1000 genomes]
rs12529276	0.86[EUR][1000 genomes]
rs1395632	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1395635	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34970714	0.86[EUR][1000 genomes]
rs4715469	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6903280	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6906715	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7746312	0.91[CEU][hapmap]
rs7753256	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296764	0.91[CEU][hapmap];0.86[ASN][1000 genomes]
rs9464114	0.81[EUR][1000 genomes]
rs9474943	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54505800-54506800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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