Variant report

Variant	rs13218383
Chromosome Location	chr6:120173501-120173502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12194033	0.81[ASN][1000 genomes]
rs1330108	0.81[ASN][1000 genomes]
rs1330109	0.81[ASN][1000 genomes]
rs1330112	0.81[ASN][1000 genomes]
rs1330114	0.86[ASN][1000 genomes]
rs1330115	0.82[ASN][1000 genomes]
rs1854662	0.85[EUR][1000 genomes]
rs2149974	0.81[ASN][1000 genomes]
rs2357759	0.81[ASN][1000 genomes]
rs2357760	0.86[EUR][1000 genomes]
rs2884263	0.81[ASN][1000 genomes]
rs5021040	0.81[ASN][1000 genomes]
rs5021042	0.81[ASN][1000 genomes]
rs6569092	0.81[ASN][1000 genomes]
rs6904839	0.81[ASN][1000 genomes]
rs6915356	0.81[ASN][1000 genomes]
rs6915714	0.80[ASN][1000 genomes]
rs6928687	0.89[ASN][1000 genomes]
rs6932256	0.81[ASN][1000 genomes]
rs7738340	0.86[ASN][1000 genomes]
rs7756951	0.86[ASN][1000 genomes]
rs7768469	0.81[ASN][1000 genomes]
rs7772500	0.86[ASN][1000 genomes]
rs7774016	0.81[ASN][1000 genomes]
rs7776192	0.81[ASN][1000 genomes]
rs9320717	0.83[ASN][1000 genomes]
rs9320718	0.81[ASN][1000 genomes]
rs9372567	0.81[ASN][1000 genomes]
rs9372568	0.81[ASN][1000 genomes]
rs9374841	0.83[ASN][1000 genomes]
rs9385100	0.81[ASN][1000 genomes]
rs9387689	0.81[ASN][1000 genomes]
rs9387690	0.81[ASN][1000 genomes]
rs9387691	0.81[ASN][1000 genomes]
rs9398532	0.81[ASN][1000 genomes]
rs9398533	0.81[ASN][1000 genomes]
rs9398534	0.81[ASN][1000 genomes]
rs9401183	0.86[ASN][1000 genomes]
rs9401185	0.86[ASN][1000 genomes]
rs9401186	0.81[ASN][1000 genomes]
rs9401187	0.81[ASN][1000 genomes]
rs9489826	0.80[ASN][1000 genomes]
rs9489827	0.81[ASN][1000 genomes]
rs952212	0.81[ASN][1000 genomes]
rs952213	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13218383	MAN1A1	cis	cerebellum	SCAN
rs13218383	GPRC6A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120152800-120177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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