Variant report

Variant	rs5021042
Chromosome Location	chr6:120206861-120206862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12194033	1.00[ASN][1000 genomes]
rs13218383	0.81[ASN][1000 genomes]
rs1330108	1.00[ASN][1000 genomes]
rs1330109	1.00[ASN][1000 genomes]
rs1330112	1.00[ASN][1000 genomes]
rs1330114	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1330115	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1873554	0.87[ASN][1000 genomes]
rs2149974	1.00[ASN][1000 genomes]
rs2357756	0.89[ASN][1000 genomes]
rs2357758	0.99[ASN][1000 genomes]
rs2357759	1.00[ASN][1000 genomes]
rs2884263	1.00[ASN][1000 genomes]
rs2884264	0.89[ASN][1000 genomes]
rs5021039	0.89[ASN][1000 genomes]
rs5021040	0.99[ASN][1000 genomes]
rs5021041	0.89[ASN][1000 genomes]
rs6569092	1.00[ASN][1000 genomes]
rs6902508	0.89[ASN][1000 genomes]
rs6904279	0.87[ASN][1000 genomes]
rs6904839	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915356	1.00[ASN][1000 genomes]
rs6915714	0.99[ASN][1000 genomes]
rs6924955	0.87[ASN][1000 genomes]
rs6928312	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6928479	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6928687	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932256	1.00[ASN][1000 genomes]
rs7738340	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756951	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768469	1.00[ASN][1000 genomes]
rs7772450	0.89[ASN][1000 genomes]
rs7772500	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7774016	1.00[ASN][1000 genomes]
rs7776192	0.99[ASN][1000 genomes]
rs9320717	0.98[ASN][1000 genomes]
rs9320718	1.00[ASN][1000 genomes]
rs9320719	0.97[ASN][1000 genomes]
rs937091	0.89[ASN][1000 genomes]
rs9372567	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372568	1.00[ASN][1000 genomes]
rs9374841	0.98[ASN][1000 genomes]
rs9374843	0.98[ASN][1000 genomes]
rs9374844	0.97[ASN][1000 genomes]
rs9385100	1.00[ASN][1000 genomes]
rs9387689	1.00[ASN][1000 genomes]
rs9387690	1.00[ASN][1000 genomes]
rs9387691	1.00[ASN][1000 genomes]
rs9398532	1.00[ASN][1000 genomes]
rs9398533	1.00[ASN][1000 genomes]
rs9398534	0.99[ASN][1000 genomes]
rs9401183	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401185	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401186	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401187	1.00[ASN][1000 genomes]
rs9401189	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9489826	0.99[ASN][1000 genomes]
rs9489827	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952212	1.00[ASN][1000 genomes]
rs952213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2830171	chr6:120200969-120233977	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120203000-120211200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:120205800-120207200	Enhancers	Dnd41	blood
3	chr6:120205800-120211600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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