Variant report

Variant	rs1330115
Chromosome Location	chr6:120154449-120154450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12194033	0.90[ASN][1000 genomes]
rs13218383	0.82[ASN][1000 genomes]
rs1330108	0.90[ASN][1000 genomes]
rs1330109	0.90[ASN][1000 genomes]
rs1330112	0.90[ASN][1000 genomes]
rs1330114	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149974	0.90[ASN][1000 genomes]
rs2357758	0.91[ASN][1000 genomes]
rs2357759	0.90[ASN][1000 genomes]
rs2884263	0.90[ASN][1000 genomes]
rs5021040	0.89[ASN][1000 genomes]
rs5021042	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569092	0.90[ASN][1000 genomes]
rs6904839	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6915356	0.90[ASN][1000 genomes]
rs6915714	0.89[ASN][1000 genomes]
rs6928312	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928479	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6928687	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6932256	0.90[ASN][1000 genomes]
rs7738340	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756951	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768469	0.90[ASN][1000 genomes]
rs7772500	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7774016	0.90[ASN][1000 genomes]
rs7776192	0.89[ASN][1000 genomes]
rs9320717	0.92[ASN][1000 genomes]
rs9320718	0.90[ASN][1000 genomes]
rs9320719	0.87[ASN][1000 genomes]
rs9372567	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9372568	0.90[ASN][1000 genomes]
rs9374841	0.92[ASN][1000 genomes]
rs9374843	0.88[ASN][1000 genomes]
rs9374844	0.87[ASN][1000 genomes]
rs9385100	0.90[ASN][1000 genomes]
rs9387689	0.90[ASN][1000 genomes]
rs9387690	0.90[ASN][1000 genomes]
rs9387691	0.90[ASN][1000 genomes]
rs9398532	0.90[ASN][1000 genomes]
rs9398533	0.90[ASN][1000 genomes]
rs9398534	0.89[ASN][1000 genomes]
rs9401183	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401185	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401186	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401187	0.90[ASN][1000 genomes]
rs9401189	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9489826	0.89[ASN][1000 genomes]
rs9489827	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs952212	0.90[ASN][1000 genomes]
rs952213	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120152200-120155400	Weak transcription	Hela-S3	cervix
2	chr6:120152200-120163400	Weak transcription	Pancreas	Pancrea
3	chr6:120152800-120177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:120153000-120155200	Weak transcription	HMEC	breast
5	chr6:120153400-120155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:120153800-120154800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:120154200-120155200	Weak transcription	NHEK	skin

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