Variant report

Variant	rs9401189
Chromosome Location	chr6:120217379-120217380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120202928..120204713-chr6:120216019..120218723,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12194033	0.97[ASN][1000 genomes]
rs1330108	0.97[ASN][1000 genomes]
rs1330109	0.97[ASN][1000 genomes]
rs1330112	0.97[ASN][1000 genomes]
rs1330114	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1330115	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1873554	0.90[ASN][1000 genomes]
rs2149974	0.97[ASN][1000 genomes]
rs2357756	0.87[ASN][1000 genomes]
rs2357758	0.96[ASN][1000 genomes]
rs2357759	0.97[ASN][1000 genomes]
rs2884263	0.97[ASN][1000 genomes]
rs2884264	0.87[ASN][1000 genomes]
rs5021039	0.86[ASN][1000 genomes]
rs5021040	0.96[ASN][1000 genomes]
rs5021041	0.86[ASN][1000 genomes]
rs5021042	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569092	0.97[ASN][1000 genomes]
rs6902508	0.86[ASN][1000 genomes]
rs6904279	0.90[ASN][1000 genomes]
rs6904839	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915356	0.97[ASN][1000 genomes]
rs6915714	0.96[ASN][1000 genomes]
rs6924955	0.85[ASN][1000 genomes]
rs6928312	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6928479	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6928687	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932256	0.97[ASN][1000 genomes]
rs7738340	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756951	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768469	0.97[ASN][1000 genomes]
rs7772450	0.89[ASN][1000 genomes]
rs7772500	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7774016	0.97[ASN][1000 genomes]
rs7776192	0.96[ASN][1000 genomes]
rs9320717	0.95[ASN][1000 genomes]
rs9320718	0.97[ASN][1000 genomes]
rs9320719	1.00[ASN][1000 genomes]
rs937091	0.87[ASN][1000 genomes]
rs9372567	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372568	0.97[ASN][1000 genomes]
rs9374841	0.95[ASN][1000 genomes]
rs9374843	0.96[ASN][1000 genomes]
rs9374844	1.00[ASN][1000 genomes]
rs9385100	0.97[ASN][1000 genomes]
rs9387689	0.97[ASN][1000 genomes]
rs9387690	0.97[ASN][1000 genomes]
rs9387691	0.97[ASN][1000 genomes]
rs9398532	0.97[ASN][1000 genomes]
rs9398533	0.97[ASN][1000 genomes]
rs9398534	0.98[ASN][1000 genomes]
rs9401183	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9401185	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9401186	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401187	0.97[ASN][1000 genomes]
rs9489826	0.96[ASN][1000 genomes]
rs9489827	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952212	0.97[ASN][1000 genomes]
rs952213	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886572	chr6:120165475-120284480	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2763951	chr6:120195400-120297444	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2830171	chr6:120200969-120233977	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120215600-120218200	Enhancers	Fetal Heart	heart
2	chr6:120215600-120218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:120216200-120230600	Weak transcription	Fetal Lung	lung
4	chr6:120216800-120217600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:120216800-120219600	Weak transcription	Placenta	Placenta

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